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Hello!
Missions are Frontline, Supplies and Acquisition. Here are the lists I'm planning to bring:

Frontline
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Supplies/Acquisition
KwBgjAPgzCIRAWApFAnMJYFWQQjABxIIiqYKoBMSuAbCJmGGSamDS7OcLTVCqmRZKDfAxLsstDGOLgklNmVwxilScCjUV49Zk3baksCLmCkAATC8SAdnIFlYfiSEIC7fC5BuC2k3L8WLYyASRBCCGWFkA===

This is my first tournament. Do you have any tips?
How do these lists seem? Is there anything I should be to be wary of, in Deployment Phase for instance? How should I deploy infiltrators? Am I missing something? What would you change?

EDIT: Tournament will be using Tactical Window rule.

Good solid lists of all stars. I don't think you'll find yourself lacking tools or anything like that. I find the bigger struggle is just getting a feel for the mission itself and how your squad needs to play into it. The amount of forward deploying stuff you've got puts a good amount of pressure on your opponent, but you need to be careful with Nomad lists like this because you're often at a notable disadvantage in F2F rolls (low general BTS and no Fireteam bonuses). Smoke for cover helps, but MSV2 can rob you of that so make sure you protect yourself with White Noise. Don't rely too much on Morlocks. A good opponent won't let you keep them long.

As far as list design I personally like one more hammer. Something like a Kriza, though the Reaktion can do the job. Zoe and Pi-well can also fill a ton of roles and generally are a solid choice.

I haven't had luck with big hammers and don't feel like I would get the most out of them, but I'll think about it.
Would it be better if I downgraded the Puppetmaster and upgrade Tomcat to Engi to have an option for repairing the TR Bot (and loosing Mines on both the Puppetmaster and Tomcat in a process) or should I keep it the way it is and use Tomcat solely for midfield suprise?

If you're comfortable with what you've got I wouldn't worry about making any big changes. Zoe is the only engineer I find myself getting a ton of use out of; and that's mostly because she does other things. It's not a bad change, but takes some practice to get the most out of. Worth playing around with when you're testing out new ideas, but not the kind of change I'd go into an event without trying out first.