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Does anyone know where I can access a Galaxy Map of the 40K Universe, in particular a comprehensive, interactive one I remember seeing before.

IIRC it was a well detailed Galaxy Map where you clicked on/hovered over planets and further details would come up.

If anyone could provide me with the link for such a map, that would be hugely appreciated. Although, I am fearing that it may have been a victim of Games Workshop cease and desist's...

The one I have in favorites was here. http://www.joachim-adomeit.de/wh40k/spacemap/map.html

However it seems to be 404 now.

The map you are looking for is no longer around. It was developed by these guys:

http://www.darkmillennia.net/galaxyMap.htm

but was removed recently from the web due to GW's new IP policy or some bs like that.

They are currently developing a newer version of the map that will be up soon

The best canon map out there right now is from the 5th & 6th ed rulebooks. The Italian version of it is on Lexicanum (just look up "The Galaxy")

As I'm actually a regular contributor on Lexicanum I've been trying to get an english version of the map for quite some time....Fortunately the Italian names more or less match up with their english counterparts.