The point of primer is essentially to provide a strong anchor for subsequent layers of paint. Really, a thorough dusting is all that should be necessary; 100% opaque coverage isn't required to get any benefits, even if it would be preferable. The reason people fill in gaps with regular paint is to get an even color base for further painting - since the missed spots are usually small and out of the way, the added resilience that primer grants is less of a concern than it would be on the spots that are easy to hit.
If you want absolute coverage with your spray, you'll need to hit them from every angle with multiple, light passes. Keeping as many parts separate as possible allows easier access. Honestly, though, I think you'll be just fine painting them up with
almost total coverage. If it really caused catastrophic issues, no one would suggest it.