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Can a seeker missile make use of additional markerlight hits to reduce the target's cover save?

If I remember right, you'd have to choose to remove cover saves against the one unit from shots fired from the vehicle with the Seeker. The seeker counts as being a shot from the vehicle and the vehicle can shoot at a completely different target than the missile, but the cover removal only affects the one enemy unit against the one vehicle unit.

So i can, and if i do the vehicle also gets the benefit for it's other weapons?

If I'm remembering right, then yes.

 HoverBoy wrote:
So i can, and if i do the vehicle also gets the benefit for it's other weapons?

Only if firing at the same target as the seeker. Otherwise the other guns get no benefit if firing at a second target.

The markers always did benefit vs the marked enemy either way.