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Some of the results in the warpstorm table target enemy units. Does this mean the enemy players units and if you are brinning for example IG as an ally to daemons, also the IG units in your army. I know you as the player do not concider them enemy models, but your models do. Still does the warpstorm table concider AOC or desperate allies in your army as enemy units?

This is unclear. Note here that it is not models in your army that are generating the Warp Storm so it could go either way in a FAQ.

NOt unclear. Only enemy units are targetted, and your AoC are NOT enemy units - not to you, but to just components of your army

Aren't distruted allies basically treated as enemies that you control?

No, AoC are treated as enemy units *by your primary detachment*

Nowhere in the storm table does it tell you to look from your primary detachments units PoV. So no, they are not enemies as far as the table is concerned