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In the Chaos codex it says that typhus has to roll all of his powers on the nurgle table. On the nurgle table it says a psyker can only roll up to half of his powers on a god table - does that mean that typhus can roll on malefic now?

Typhus's entry overrules the basic God-Specific part of the Chaos codex as it's more specific, forcing him to roll all his powers from the Nurgle table.

The Malefic is a bit more complicated - the 7th ed Rulebook and Chaos FAQ give him access to Daemonology, but his own rule could still win out.
I'm not certain either way on that. In a friendly game I wouldn't have a problem with it, but I suspect in any kind of competitive environment it would be questioned.

He isnt given permission to generate powers from anywhere other than Nurgle, as the FAQ is overwritten by his more specific entry.