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So is there a better way to find which Mercs can go with which armies outside of looking at each army in the online builder?

A chart would be great. Something like a quick reference.

I didn't see one in the N3 books, maybe I missed it.

Outside of the official tournament system, Mercenaries can be used in any (human) army, subject to your opponent's agreement.

Some Mercenaries whose stats are in the N3 rulebook will say they can be used by any generic human army (Bounty Hunters, Miranda Ashcroft and Warcors). That covers the limited edition miniatures that came with the Campaign Paradiso, Art Book and N3 pre-orders.

Other than that, only Infinity Army 6 and the N3 Unit Profiles PDF list which Mercenaries can be included in various armies. Look at the army lists at the end of the PDF.

I don't think there's a document which lists each Mercenary and then all the armies they can be in, though.

^ What he said.

Army6 is an ITS tool (it can't show you how to do a non-ITS legal list with mercs as it will only show those mercs that you CAN take in that format. You can't take the ABH in a sectorial, etc.

Outside of ITS, any army can take any merc subject to your opponent's agreement (it's part of the same compact that includes your opponent agreeing to play you or not).