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Anyone know of a modern day skirmish game with fantasy elements?

Maybe something like necromunda or frostgrave but set on present day earth.
Could be near-future sci-fi.

Osprey do a game called Scrappers. Humans/muties and AI bots

Punkapocalyptic:
https://www.badrollgames.com/en/

I haven't tried it, but the background and general direction is cool and quite hilarious. Heard good things about the game too.

Otherwise, Malifaux could maybe fit, considering it is like late 19th - early 20th century alternative Earth.

Last Days is excellent, made by a poster here, and is about to get a really cool campaign expansion book. Very under-appreciated game.

You might be interested in Pulp Alley, which is quite flexible or, if you're willing to wait a bit, the upcoming Gangfight should let you pull this off.

This is a niche that needs to be filled.... desperately.

There's also the upcoming Witchin' Hour and the already released Fear and Faith by Ganesha Games along with its expansion Kooky Teenage Monster Hunters.