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I am going to be ordering a large set(4x4) of the Zone Mortalis board from Forgeworld, how many large and small doors should I order to go with it do you think?

Does anyone know where I can find some alternate or fan made missions for zone mortalis?

There are zone mortalis mission in the FW HH books and Anphelion Project v2. Obviously the Anpehlion ones are themed.
No idea on # of doors sorry.

Do you know what HH book has them?

Every HH book ads more.

The 2nd one did not seem to add any zone mortalis missions, and the first book seems to have been just the normal zone mortalis rules.

IA12 has a good chunk of ZM missions.